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Pyrimidine A class of nucleotide base with an aromatic ring containing four carbon and two nitrogen atoms. Pyrophosphate bonds The covalent bonds between adjacent, covalently linked, phosphate groups. Quaternary structure A molecule structure in which two or more tertiary structures attach or associate with one another to form an even larger molecule or complex. Ramachandran diagram A plot of peptide bond angles showing contours of which angles fall within certain energy ranges. Random coil A conformation in which a polymer has no specific secondary structure. Reference state A state of a system chosen to be used to define all other states of the system. The other states of the system are defined in terms of the difference in energy (or some other quantity) between them and the reference state. Often the ground state is chosen as the reference state. Reflection Light (electromagnetic radiation) bouncing off a surface. Refraction The bending of light (electromagnetic radiation) while passing through a surface. Regulation The control of a biological process by a cell or organism, usually through some kind of a feedback mechanism. Residue Each of the units or smaller molecules making up a polymer. Ribose A five-carbon simple sugar (carbohydrate) commonly found in nucleotides. Ribosome A complex of structural proteins, enzymes, and ribosomal RNA, a basic structure involved in protein synthesis. Right-handed helix A helix that turns clockwise as you move along its length. RNA (ribonucleic acid) A nucleic acid whose nucleotides contain ribose. See also mRNA (messenger RNA), tRNA (transfer RNA), and rRNA (ribosomal RNA). RNA polymerase An enzyme that catalyzes the biochemical reaction to covalently link ribonucleotides together to form RNA. Saccharide Another name for carbohydrate. (See also monosaccharide, disaccharide, oligosaccharide, and polysaccharide.) Salt bridge An ionic attraction between a positive and negative ion, usually between two parts of the same molecule (such as a protein) or between two molecules within a complex.
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IN THIS CHAPTER
// Demonstrate random access. using System; using System.IO; class RandomAccessDemo { static void Main() { FileStream f; char ch; try { f = new FileStream("random.dat", FileMode.Create); } catch(IOException exc) { Console.WriteLine(exc.Message); return ; } // Write the alphabet. for(int i=0; i < 26; i++) { try { f.WriteByte((byte)('A'+i)); } catch(IOException exc) { Console.WriteLine(exc.Message); f.Close(); return ; } } try { // Now, read back specific values. f.Seek(0, SeekOrigin.Begin); // seek to first byte ch = (char) f.ReadByte(); Console.WriteLine("First value is " + ch); f.Seek(1, SeekOrigin.Begin); // seek to second byte ch = (char) f.ReadByte(); Console.WriteLine("Second value is " + ch); f.Seek(4, SeekOrigin.Begin); // seek to 5th byte ch = (char) f.ReadByte(); Console.WriteLine("Fifth value is " + ch); Console.WriteLine(); // Now, read every other value. Console.WriteLine("Here is every other value: ");
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